Psilocin Human Neuron Transcriptomics

com.psilocybin-researchPublished by psilocybin-research.comOfficial publisherv2.0.0Updated Nov 7, 2026

Read-only psilocin human-neuron gene results, pathway sensitivities and archived provenance.

The publisher's own server: Psilocybin Research MCP — Papers, Trials and Research Data

VerifiedStreamable HTTPWeb executableKnowledge & MemoryData & Analytics

Overview

AI-generated overview

Read-only access to a fixed psilocin human-neuron RNA-seq reanalysis: gene-level DESeq2 results, pathway enrichment, robustness tables and provenance.

What you can do
  • Find genes by literal symbol or Ensembl ID in the fixed Zenodo v1.2.0 results
  • Retrieve DESeq2 estimates for all three contrasts, with source tables, citations and limitations
  • Search frozen pathway identifiers and return all FGSEA variants plus both CAMERA settings, including nonsignificant results
  • Read robustness material: CAMERA tables, Bayesian model summaries and diagnostics, alias sensitivity and exploratory analyses
  • Inspect provenance: Zenodo DOI, archive and source-table checksums, analysis commit, field definitions, sample design and licence notices
When to use it
Use it when you need to check specific gene or pathway results from this particular psilocin human-neuron reanalysis, or to confirm how the data was produced and licensed before citing it. It is not a literature search tool and does not cover other experiments.
Requirements
A remote streamable HTTP endpoint; no package, account, API key or environment variable is declared. Network access to the provider's endpoint is needed.
Before you install
Results come from a single reused experiment, so analyses are not independent replications, and transcriptional signals do not establish respiration, redox flux or telomere protection. The server is read-only and does not query the literature catalogue; cite the archived provenance and licence notices when reusing results.

Installation

In SourceWeft

  1. Open Psilocin Human Neuron Transcriptomics in the dashboard and add it to a workspace.
  2. Enable the server for the chats that should use its tools.

Web executable via Streamable HTTP. Remote servers run from the web runtime once configured in a workspace.

Use with an agent

Paste this prompt into Claude Code, Codex, Cursor or another agent — or into SourceWeft chat. The agent reads this server's install guide, shows you its publisher, endpoint and sign-in, and adds it to your client once you agree. Keys never go into a command.

Read https://sourceweft.com/mcp/com.psilocybin-research%2Ftranscriptomics/install.md and connect the MCP server it describes to my client. Before changing any config, show me its publisher, endpoint and sign-in method and wait for my OK. Never put an API key in a command or in a file I would commit; ask me where it should come from.

Read the install guide the agent follows

Other MCP clients

Add this to your client's mcpServers config.

{
  "mcpServers": {
    "psilocin-human-neuron-transcriptomics": {
      "type": "http",
      "url": "https://psilocybin-research.com/mcp/transcriptomics"
    }
  }
}

Tools

5

search_transcriptomic_genes

Find genes in the psilocin reanalysis

Literal symbol or Ensembl-ID discovery in fixed Zenodo v1.2.0 primary RNA-seq results. Returns bounded matches; not publication search or semantic search.

Parameterslimitqueryrequiredoffset

get_transcriptomic_gene

Read primary gene expression results

Exact symbol or Ensembl ID. Returns DESeq2 estimates for all three contrasts unless one is specified, missing values, source tables, citations and limitations. No automatic alias substitution; not a functional measurement.

Parametersgenerequiredcontrast

get_transcriptomic_pathways

Read pathway results and sensitivities

Search frozen pathway identifiers by literal substring (spaces become underscores). Returns all FGSEA variants and BOTH CAMERA settings where tested, including nonsignificant results. Paginate at most five pathways per call. Not independent replication.

Parameterslimitqueryoffsetcontrast

get_transcriptomic_robustness

Read complete robustness and follow-up summaries

Complete imported CAMERA tables for both settings, all ten Bayesian model summaries and diagnostics, alias sensitivity, exploratory DNA-maintenance or targeted redox results. topic defaults to all. Includes negative results and scientific limitations; no model fitting.

Parameterstopic

get_transcriptomic_provenance

Read snapshot provenance, design and licences

Fixed Zenodo DOI, archive checksums, analysis commit, source-table checksums, field definitions, pooled sample design and attribution/licence notices. Separate from the live publication database; updates require a reviewed snapshot deployment.

Takes no parameters.

Version history

1
  1. v2.0.0LatestNov 7, 2026

Score

83% of the applicable checks met

How complete this listing is, computed from the registry entry, the endpoint and public sources. Not a rating of the server and not a statement that it is safe or working today: reachability is a dated check, and no installs or reviews go into the score.

  • Reached in the last 30 daysRequired25 pts
  • Auth declaredRequired10 pts
  • Tools listedRequired15 pts
  • DescriptionRequired15 pts
  • Logo10 pts
  • Documentation15 pts

    Declare a GitHub repository with a README, or serve resource_documentation in the OAuth protected-resource metadata.

  • LicenseNot applicable

    A hosted service is used under its provider's terms, so no license is expected here. This check is left out of the percentage.

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