BioMCP

io.github.gucci10248Published by GitHub account gucci10248v0.8.22Updated Oct 24, 2026

50+ biomedical data sources in one MCP server — PubMed, ClinVar, gnomAD, KEGG, and more

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Overview

AI-generated overview

BioMCP is a local MCP server that gives an assistant access to more than 50 biomedical data sources, including PubMed, ClinVar, gnomAD and KEGG.

What you can do
Query biomedical literature and databases such as PubMed, ClinVar, gnomAD and KEGG through a single server covering over 50 sources.
When to use it
Useful when an assistant needs to look up biomedical literature, genetic variant data or pathway information across several public sources without setting up each one separately.
Requirements
Runs as a local process via the Docker image docker.io/jackgucci/biomcp:0.8.22 over stdio. Docker is required; no authentication, environment variables or headers are declared.
Before you install
The manifest lists no tools, so the exact queries and outputs are unverified. Requests go to third-party biomedical data sources, so check what data is sent and whether those sources have usage limits.

Installation

In SourceWeft

  1. Open BioMCP in the dashboard and add it to a workspace.
  2. Enable the server for the chats that should use its tools.

Desktop only via STDIO. STDIO servers start a local process, so they need the SourceWeft desktop host.

Other MCP clients

Follow the launch instructions in the repository.

README

This repository has no README.

Tools

0
SourceWeft has not started this package in its sandbox yet, so its tools are not known.

Version history

1
  1. v0.8.22LatestSep 16, 2026

Score

25% of the applicable checks met

How complete this listing is, computed from the registry entry, the endpoint and public sources. Not a rating of the server and not a statement that it is safe or working today: reachability is a dated check, and no installs or reviews go into the score.

  • Reached in the last 30 days25 pts

    Keep the endpoint answering the MCP handshake; SourceWeft probes it every 30 days.

  • Auth declared10 pts

    Declare the credential headers in the registry entry, or keep the endpoint answering the probe so its auth can be classified.

  • Tools listed15 pts

    Answer tools/list without a credential, or ship a package that starts in a sandbox without one.

  • DescriptionRequired15 pts
  • Logo10 pts
  • Documentation15 pts

    Declare a GitHub repository with a README, or serve resource_documentation in the OAuth protected-resource metadata.

  • License10 pts

    Declare a license in the repository or the registry entry.