c3fst Biomedical Search

io.github.mjandrews1Published by GitHub account mjandrews1v1.0.0Updated Oct 24, 2026

Biomedical search: FDA drugs, MeSH headings, ClinVar genomic variants with BM25 ranking.

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Overview

AI-generated overview

A local MCP server that lets an assistant search biomedical sources: FDA drugs, MeSH headings and ClinVar genomic variants, ranked with BM25.

What you can do
Search FDA drug information by name or term, with BM25-ranked results returned to the assistant. Look up MeSH subject headings to support biomedical terminology and indexing. Query ClinVar genomic variant records and get ranked matches. Combine these sources in one local server for biomedical lookup tasks.
When to use it
Useful when an assistant needs to look up drug, medical subject heading or genomic variant information during biomedical research, literature review or terminology work, and you want those lookups available as tools rather than manual browsing.
Requirements
Runs as a local process on the user's machine, installed from the PyPI package c3fst-mcp-server; the manifest lists SSE as its package transport while the registry transport is stdio. No authentication, environment variables or headers are declared. Desktop only; not available as a web executable.
Before you install
The manifest declares no credentials, but the server is not described as authoritative medical reference; verify drug, heading and variant results before relying on them for clinical or research decisions. No tool list or README was provided, so the exact queries and data sent to upstream sources are not documented.

Installation

In SourceWeft

  1. Open c3fst Biomedical Search in the dashboard and add it to a workspace.
  2. Enable the server for the chats that should use its tools.

Desktop only via STDIO. STDIO servers start a local process, so they need the SourceWeft desktop host.

Other MCP clients

Follow the launch instructions in the repository.

README

This repository has no README.

Tools

0
SourceWeft has not started this package in its sandbox yet, so its tools are not known.

Version history

1
  1. v1.0.0LatestSep 21, 2026

Score

25% of the applicable checks met

How complete this listing is, computed from the registry entry, the endpoint and public sources. Not a rating of the server and not a statement that it is safe or working today: reachability is a dated check, and no installs or reviews go into the score.

  • Reached in the last 30 days25 pts

    Keep the endpoint answering the MCP handshake; SourceWeft probes it every 30 days.

  • Auth declared10 pts

    Declare the credential headers in the registry entry, or keep the endpoint answering the probe so its auth can be classified.

  • Tools listed15 pts

    Answer tools/list without a credential, or ship a package that starts in a sandbox without one.

  • DescriptionRequired15 pts
  • Logo10 pts
  • Documentation15 pts

    Declare a GitHub repository with a README, or serve resource_documentation in the OAuth protected-resource metadata.

  • License10 pts

    Declare a license in the repository or the registry entry.