Gemdex

io.github.nikshipsPublished by GitHub account nikshipsv1.0.47Updated Oct 24, 2026

Persistent memory layer for AI coding agents: save, recall, update via Gemini plus LanceDB

VerifiedSTDIODesktop onlyKnowledge & MemoryDeveloper Tools

Overview

AI-generated overview

Gemdex is a persistent memory layer for AI coding agents: it saves, recalls and updates memories across repos and sessions using embeddings plus keyword search.

What you can do
Save memories with text and small text attachments, returning an id and title, and update them by full replacement or literal edits, or delete them permanently on the local stdio surface only. Recall by text query to get a short list of titles and ids, then open a full memory body with its age, attachments and track record. Record whether a recalled memory worked, failed or became stale, and optionally weight ranking by those outcomes. Read attachment bytes back as UTF-8 or base64. Ingest chat history from coding agents into digest memories, and run hygiene passes that cluster and judge candidates for cleanup.
When to use it
Useful when you want an assistant to carry reusable findings, conventions or workflow notes between sessions and repositories instead of re-explaining them. Best suited to developers running coding agents on Apple Silicon macOS who want memory kept on-device, or teams self-hosting a shared pool.
Requirements
Runs locally via npx as a stdio process; local mode needs Apple Silicon, macOS 14+ and native arm64 Node 24 or newer, and the install downloads about 1.3 GB of managed Python/MLX and embedding weights. GEMINI_API_KEY is required in local mode unless set to the value 'local' for on-device embeddings. Remote mode needs GEMDEX_REMOTE_URL and the GEMDEX_REMOTE_TOKEN bearer token. Chat-history ingestion needs Claude Code and a logged-in account.
Before you install
Memory text and attachments are stored in plaintext with no secret redaction, so avoid saving credentials. Local ingestion and hygiene send selected transcripts through Claude Code inference on your account, which counts against plan limits or incurs Haiku-equivalent costs. The self-hosted server sends embedding payloads and session digestion to Gemini using its key. Delete is permanent and only available on the local stdio surface; exposing a self-hosted deployment beyond loopback needs HTTPS,

Installation

In SourceWeft

  1. Open Gemdex in the dashboard and add it to a workspace.
  2. Enable the server for the chats that should use its tools.

Desktop only via STDIO. STDIO servers start a local process, so they need the SourceWeft desktop host.

Other MCP clients

Follow the launch instructions in the repository.

README

Save a useful memory once and recall it across repos and sessions. Gemdex indexes small chunks for precise hybrid semantic + BM25 matching, then resolves matches to whole parent memories. MCP agents scan a cheap title index and open only the memories they need.

Two ways to run it

LocalSelf-hosted
Agent connectionnpx gemdex-mcp, stdioStreamable HTTP /mcp
EmbeddingsOn-device EmbeddingGemma 2 via MLXServer-owned Gemini, including multimodal
StorageLanceDB and blobs under ~/.gemdexPostgres/pgvector and file/S3 blobs
PlatformApple Silicon, macOS 14+, native arm64 Node ≥24Docker host
Human managementNative macOS app via localhost sidecarWeb manager
PoolOne per machineShared across machines
MCP toolsSeven, including deleteSix, without delete

These are separate pools. The npx package and desktop sidecar are local-only; connect directly to HTTP MCP for a self-hosted pool.

Local quickstart

bash
npx gemdex-mcp installclaude mcp add gemdex -- npx -y gemdex-mcp@latest

The explicit install downloads managed Python/MLX and pinned mlx-community/embeddinggemma-2-8bit weights, about 1.45 GB to download and 1.9 GB on disk. No Python, uv, Homebrew, HF CLI, or compiler setup is needed. Embeddings run offline after installation. There is no API key, sentinel value, or provider switch. Rosetta Node is unsupported. See MLX model and runtime requirements.

All seven tools remain discoverable before installation and return setup guidance. Retry a tool after installation, or reconnect your MCP client.

For another MCP client:

json
{  "mcpServers": {    "gemdex": {      "command": "npx",      "args": ["-y", "gemdex-mcp@latest"]    }  }}

Save and recall

Ask your agent to save something durable:

text
Save how we set up the review workflow to memory.

Then, in another session or repo using that pool:

text
Check memory for our review workflow and use it here.

Tell your agent when to use memory in its instructions:

markdown
## Memory
Use Gemdex recall to find relevant memories before starting work.Save reusable findings and update existing memories when correcting them.Report worked/failed/stale outcomes after acting on a fetched memory.Use read_attachment for transcript bytes.Delete only when a memory should be permanently removed and the connectedsurface provides delete_memory.

MCP tools

ToolBehavior
save_memorySave content and/or attachments (images, audio, video, text files); return id and title
recallText query and/or example media files, top 10 titles + ids, never full bodies
get_memoryFull parent body, age, attachments and track record
update_memoryFull content replacement or literal edits, optional title/attachments
report_outcomeRecord worked, failed, or stale, with optional note
read_attachmentAttachment as UTF-8 text, a viewable image, or base64
delete_memoryStdio only, permanent delete and client-stat cleanup

get_memory, not title-index recall, increments recall counts. Stats live in a separate ledger (~/.gemdex/stats.json by default). GEMDEX_TRUST_RANKING=true enables outcome-weighted title ranking; otherwise ranking is relevance-only.

Local saves include an advisory when existing memories are similar, using already-computed vectors and centroid similarity (default threshold 0.93). The advisory does not block the save. Configure it with GEMDEX_SIMILAR_ON_SAVE and GEMDEX_SIMILAR_THRESHOLD.

Attachments

Local memories can carry images (PNG, JPEG, WebP, GIF), audio (WAV, MP3, M4A, FLAC, AAC, AIFF; up to 5 minutes) and video (MP4, MOV, M4V, WebM). EmbeddingGemma 2 embeds each file on-device into the same space as text, so the memory is found by what the image shows or the recording says. Recall also takes example files: "is there anything in memory about this screenshot?" works with or without a text query. Captions are optional; they add keyword matching and help most for audio. Text files (.txt, .json, .jsonl/.ndjson) are stored as non-embedded blobs. Per memory: 8 images, 4 audio files, 2 videos and 4 text files, 100 MiB each. PDFs are not supported locally. Use a local path or inline base64 data + mimeType; every attachment is readable through read_attachment.

The self-hosted server supports Gemini multimodal embedding and media recall through /v1. HTTP MCP attachment inputs are inline base64 only, never client filesystem paths. See the /v1 contract.

Chat history and memory hygiene

Local digestion and hygiene use your existing Claude Code login. Install Claude Code and run claude auth login, then:

bash
npx gemdex-mcp statusnpx gemdex-mcp ingest-history --source claude --dry-runnpx gemdex-mcp ingest-history --source claude

Sources include Claude Code, Factory CLI, Codex, Antigravity, or a folder path. Only never-before-ingested sessions are processed. Each produces a digest memory and a cleaned transcript attachment. backfill-transcripts attaches files referenced by older digest footers, with --dry-run and --force options; missing files are skipped with a message.

Inference runs as isolated claude -p --model haiku structured-JSON calls: no tools, settings, skills, MCP servers, hooks, CLAUDE.md, or session persistence, and a temporary working directory. Concurrency is four, with at most three total attempts and a five-minute timeout per call.

Cost estimates are Haiku API list-price equivalents ($1 input / $5 output per million tokens). With a Claude subscription, usage counts against plan limits, not a per-token bill. Local embeddings stay on-device, but ingestion transcripts and hygiene candidates go through Claude Code inference.

Hygiene first clusters local vectors, then judges candidates with Claude Code. Deleting findings requires human approval. Self-hosted uploads instead use the server's Gemini digestion. See chat-history paths.

The desktop app

The native macOS app manages the local pool: browse, search (by text or by file), and edit memories, attach and preview images, audio and video, ingest chat history, and review hygiene findings. It talks to gemdex serve, which binds only 127.0.0.1 and uses a per-launch token. Its contract exposes explicit MLX install/migration jobs and Claude Code readiness. Memory routes return 503 {needsInstall:true} until installation; ingestion/hygiene start requires Claude Code readiness. See the sidecar contract.

The web manager is the primary human surface for self-hosted deployments. The desktop app is not a client for that pool.

Self-host the whole stack (one command)

bash
curl -fsSL https://raw.githubusercontent.com/nikships/gemdex/main/scripts/install.sh | bash

The installer starts Postgres, gemdex-server, HTTP MCP and the web manager, generates secrets, waits for migrations, verifies a real save and recall, and prints Streamable HTTP client configuration. It asks for a Google AI Studio key, or reads GEMINI_API_KEY. This key belongs to the server, not the agent client.

The default is loopback-only. --lan exposes MCP and web to your trusted LAN with static MCP auth and login-free web access. For public access, use HTTPS, Google OAuth, and the deployment guide. Never publish Postgres or /v1.

json
{  "mcpServers": {    "gemdex": {      "type": "http",      "url": "https://gemdex.example.com/mcp"    }  }}

This example targets a Google OAuth deployment; the client handles login.

GuidePurpose
Self-host deployCompose, Google OAuth, HTTPS edge and exposure checks
OperationsStorage, backup/restore, upgrades and troubleshooting
Go furtherDNS, managed platforms, sizing and costs
SecurityEnforced boundaries and pre-launch checklist
Chat historyLocal ingestion, web upload and OAuth record import

Packages and library use

PackageResponsibility
coreMemoryStore, embedding providers, shared HTTP router and inference
mcpLocal stdio tools, CLI and desktop sidecar
serverBYOI /v1, Postgres/pgvector, Gemini and file/S3 blobs
mcp-httpSix-tool Streamable HTTP agent surface
webBrowser manager and session-upload BFF
appNative local manager

To use the engine directly, see the core library example. Local environment settings are in the MCP README; self-hosted settings are in the server README.

Privacy & safety

Memory text and attachment bytes are plaintext unless you add your own storage controls. Gemdex provides no secret redaction or hosted custody service. Local embeddings run on-device; local ingestion and hygiene send selected content through Claude Code using your account. The self-hosted server sends embedding payloads and uploaded-session digestion to Gemini using its key. See custody and self-host security.

Build from source

From a clone with Node ≥24 and pnpm ≥10:

bash
pnpm installpnpm build

The local MCP entry point is packages/mcp/dist/index.js. See CONTRIBUTING.md for checks and development guidance.

License

MIT. See LICENSE.

MCP Registry

mcp-name: io.github.nikships/gemdex

Source: README.md at commit 366991b

Tools

0
SourceWeft has not started this package in its sandbox yet, so its tools are not known.

Version history

1
  1. v1.0.47LatestSep 23, 2026

Score

50% of the applicable checks met

How complete this listing is, computed from the registry entry, the endpoint and public sources. Not a rating of the server and not a statement that it is safe or working today: reachability is a dated check, and no installs or reviews go into the score.

  • Reached in the last 30 days25 pts

    Keep the endpoint answering the MCP handshake; SourceWeft probes it every 30 days.

  • Auth declared10 pts

    Declare the credential headers in the registry entry, or keep the endpoint answering the probe so its auth can be classified.

  • Tools listed15 pts

    Answer tools/list without a credential, or ship a package that starts in a sandbox without one.

  • DescriptionRequired15 pts
  • Logo10 pts
  • Documentation15 pts
  • License10 pts