Oliver's mTOR Atlas

io.github.open-mtor-atlasv1.0.0更新于 Oct 1, 2026

Evidence-labelled mTOR research: studies, entities, pathway claims, contradictions, open questions.

已验证STDIO仅桌面Knowledge & Memory

概览

AI 生成的概览

只读访问一个精选的 mTOR 研究图谱，涵盖研究、实体、通路主张、矛盾与未解问题。

功能
查询 Oliver's mTOR Atlas：一个按研究类型标注的精选 mTOR 研究语料，以及基因、复合物、药物、疾病、过程等实体。工具包括数据集元信息、研究与实体的检索和查看、带支持与冲突证据的通路关系、两个实体之间的证据、矛盾主张以及未解问题。所有访问均为只读。
适用场景
适合需要带证据标注的 mTOR 生物学信息时：核查某项通路主张有哪些研究支持或质疑、查找与某研究相关的实体，或发现未解问题与证据空白。它不是通用文献检索；未出现在该语料中并不代表该关系未知。
运行要求
以 stdio 在本地运行，通常通过 npx 使用 npm 包 mtor-atlas-mcp，因此需要 Node.js。无需密钥或账号。可选变量 ATLAS_API_BASE 可指向另一份 API 副本或本地目录；默认使用公开的 Atlas API，因此通常需要网络访问。
安装前请注意
只读：不会写入、发送或删除数据。不要求任何凭据。除非将 ATLAS_API_BASE 设为本地副本，查询会发往公开的 Atlas API。证据代码描述的是研究类型而非质量，结果仅限于该精选语料。

安装

在 SourceWeft 中

  1. 打开 控制台中的 Oliver's mTOR Atlas，将其添加到工作区。
  2. 为需要使用其工具的对话启用该服务。

Desktop only，通过 STDIO。 STDIO 服务会启动本地进程，因此需要 SourceWeft 桌面宿主。

其他 MCP 客户端

参照 仓库 中的启动说明。

README

mTOR Atlas MCP server

Read-only access to Oliver's mTOR Atlas for AI assistants that speak the Model Context Protocol: curated mTOR studies labelled by the kind of study behind them, entities (genes, complexes, drugs, diseases, processes), signed pathway relations with their supporting and conflicting evidence, and the Atlas's open questions.

The server reads the Atlas's public static API (https://mtor-atlas.org/api/v1/, documented at mtor-atlas.org/api). No key, no account. Data is CC BY 4.0.

Install

Claude Desktop, Claude Code, Cursor and other MCP clients:

json
{  "mcpServers": {    "mtor-atlas": { "command": "npx", "args": ["-y", "mtor-atlas-mcp"] }  }}

Claude Code: claude mcp add mtor-atlas -- npx -y mtor-atlas-mcp

Tools

ToolWhat it answers
atlas_aboutDataset version, corpus snapshot, counts, evidence codes, how to cite
search_studiesStudies by keywords, evidence code, linked entity, year
get_studyOne study with its entities, relations and open questions
search_entities / get_entityGenes, drugs, diseases… with their studies and relations
find_relations / get_relationPathway claims ("Rheb activates mTORC1") with mechanism, boundary conditions and confidence
evidence_between"What is the evidence that A acts on B?" with both supporting and conflicting studies
find_contradictionsContested claims, with both sides of the evidence
list_questions / get_questionOpen evidence gaps and testable hypotheses

Reading the evidence codes

S synthesis of human data · H human study · A animal model · M molecular / in vitro · R review · PP preprint · RT registered trial. The code describes the kind of study, not its quality. Every record the server returns repeats this, so a code never travels without its meaning.

"Not in the Atlas" means not in this curated corpus. It does not mean the relationship is unknown.

Cite

Barton O. Oliver's mTOR Atlas. doi:10.5281/zenodo.22059963. Give the dataset_version and corpus_snapshot returned by atlas_about.

Configuration

ATLAS_API_BASE (optional) points the server at another copy of the API, for example a local build: ATLAS_API_BASE=/path/to/dist/api/v1.

Code: MIT. Data: CC BY 4.0.

来源：mcp/README.md，提交 e61f726

工具

0
工具元数据尚未被收录。

版本历史

1
  1. v1.0.0最新Oct 1, 2026