PapersFlow

papersflow-mcp

papersflow-mcp is PapersFlow's production / GA hosted MCP server for literature search, citation verification, related-paper discovery, and authenticated research workflows across Claude, Codex, Gemini, ChatGPT-style MCP apps, and other MCP clients.

Production Endpoint

• MCP URL: https://doxa.papersflow.ai/mcp
• OAuth protected resource metadata: https://doxa.papersflow.ai/.well-known/oauth-protected-resource
• OAuth authorization server metadata: https://doxa.papersflow.ai/.well-known/oauth-authorization-server
• Dynamic client registration: https://doxa.papersflow.ai/oauth/register

Public Tool Surface

• search
• fetch
• verify_citation
• search_literature
• find_related_papers
• get_citation_graph
• get_paper_neighbors
• expand_citation_graph

Authenticated and paid tools are available through PapersFlow account access and plan entitlements.

Documentation

• Setup tutorial
• MCP release guide

Gemini CLI Extension

This repository also includes a root gemini-extension.json so Gemini CLI can install it as an extension wrapper around the hosted MCP server.

Official Gemini CLI flow supported by the docs:

gemini extensions install https://github.com/papersflow-ai/papersflow-mcp

The extension manifest lives at the repository root and points Gemini CLI at the hosted MCP endpoint using Gemini's remote MCP config shape.

If Gemini shows:

papersflow-mcp (from papersflow-mcp) - Disconnected (OAuth not authenticated)

that is expected until OAuth is completed inside Gemini:

/mcp auth papersflow-mcp/mcp refresh/mcp list

gemini extensions install installs the extension package. It does not complete OAuth during install. The browser opens when Gemini starts the remote MCP auth flow, typically via /mcp auth papersflow-mcp or the first auth-required connection attempt.

Gemini CLI references:

• https://geminicli.com/docs/extensions/releasing/
• https://geminicli.com/docs/extensions/reference/
• https://geminicli.com/docs/extensions/writing-extensions/

Client Setup

Cline (VS Code)

Add PapersFlow as a remote MCP server in your Cline MCP settings:

{  "mcpServers": {    "papersflow": {      "url": "https://doxa.papersflow.ai/mcp",      "transportType": "streamable-http"    }  }}

On first use, Cline will open a browser window for OAuth sign-in to your PapersFlow account. Public tools (literature search, citations, paper discovery) work immediately; authenticated tools require a PapersFlow plan.

Other Clients

Supported client paths today:

• Codex
• Claude Code
• Gemini CLI
• ChatGPT-style hosted MCP apps

The setup guide includes both command-style and config-style snippets where supported.

Support And Policies

• Website: https://papersflow.ai
• Privacy: https://papersflow.ai/privacy
• Terms: https://papersflow.ai/terms
• Support: https://papersflow.ai/contact
• Support email: [email protected]

Notes

• This repository is the public documentation and submission surface for the hosted MCP service.
• The production service is operated by PapersFlow and backed by the main PapersFlow platform.