
Labmate Mcp
io.github.JonasRackl由 GitHub 帳號 JonasRackl 發布v7.3.1更新於 Oct 27, 2026
81 chemistry tools — literature, calculations, retrosynthesis
概覽
一套化學研究用的 MCP 伺服器,提供 81 個工具,涵蓋文獻檢索、化合物資料、逆合成、實驗桌計算與引用格式整理。
- 可以做什麼
- 跨 Crossref、OpenAlex 與 Semantic Scholar 檢索論文,追蹤引用關係,查找作者檔案、預印本與開放取用 PDF
- 查詢化合物、理化性質、安全資料、晶體結構、質譜、結合親和力與蛋白質結構
- 執行計算化學:逆合成、產物預測、原子對映、pKa、溶解度、ADMET 與 NMR 位移預測
- 將胜肽序列轉為 SMILES、產生胜肽庫、評估合成可行性並解析 MS/MS 離子
- 使用實驗桌計算器與參考查詢:莫耳濃度、反應投料量、命名反應、保護基、溶劑、後處理、顯色劑、緩衝液與安全卡
- 整理引用與參考文獻清單,產生實驗模板,查詢期刊要求並準備補充資料清單
- 適用情境
- 適合化學研究者與學生,讓助理在同一處協助文獻回顧、合成路線規劃、反應開發、實驗計算與論文撰寫準備。多數參考與計算工具不需任何設定即可使用。
- 執行需求
- 以 Python 套件透過 pip 在本機安裝,並由 Claude Desktop 或 Claude Code 設定以 stdio 啟動。選用的免費 API 金鑰可解鎖更多工具:ROWAN_API_KEY 用於 pKa、溶解度、ADMET 與 NMR 預測,RXN_API_KEY 用於逆合成與產物預測;另有 Semantic Scholar、Unpaywall、Materials Project、Web of Science 與 EPA CompTox 的選用金鑰。金鑰可存於本機 env 檔或寫入伺服器設定。
安裝
在 SourceWeft 中
- 開啟 儀表板中的 Labmate Mcp,將其新增到工作區。
- 為需要使用其工具的對話啟用該服務。
Desktop only,透過 STDIO。 STDIO 服務會啟動本機處理程序,因此需要 SourceWeft 桌面主機。
其他 MCP 客戶端
參照 儲存庫 中的啟動說明。
README
🧪 labmate-mcp
Your AI lab companion — from literature search to benchwork to publication.
[PyPI version] [Downloads] [Python] [License]
81 tools · 25+ scientific APIs · 202 named reactions · zero config required
Quick Start ↓ • What Can I Do? • All 81 Tools • Configuration • Examples
labmate-mcp is an MCP server that connects Claude to scientific databases, computational chemistry tools, bench references, and writing utilities. One install covers the entire research workflow.
🚀 Quick Start
Then add this to your Claude config:
Claude Desktop → claude_desktop_config.json
On macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
On Windows: %APPDATA%\Claude\claude_desktop_config.json
Claude Code → .mcp.json in your project root
Docker
Restart Claude. 61 of 81 tools work out of the box — no API keys needed.
[!TIP] Want retrosynthesis, pKa prediction, or NMR shifts? Run
labmate-mcp --setupto add free API keys.
💬 What Can I Do With This?
Just talk to Claude naturally:
More things you can ask
🔧 Tool Reference
📚 Literature & Discovery — 15 tools
Search papers across multiple databases, explore citation graphs, find open access PDFs, and track research trends.
Show all 15 tools
🔬 Compound Data & Safety — 12 tools
Look up any compound by name, SMILES, or formula. Get safety data, binding affinities, crystal structures, and more.
Show all 12 tools
⚗️ Computational Chemistry — 11 tools
AI-powered retrosynthesis, forward reaction prediction, pKa, solubility, ADMET, and NMR shift prediction.
Show all 11 tools
IBM RXN and Rowan tools require free API keys. See Configuration.
🧬 Peptide Chemistry — 10 tools
Sequence-to-SMILES conversion with 450+ amino acids, cyclization, library generation, pI calculation, and MS/MS interpretation.
Show all 10 tools
🧪 Bench Chemistry — 18 tools
Everyday lab calculators and a reference library covering named reactions, protecting groups, solvents, workup protocols, and more.
Show all 5 calculators
Show all 13 reference tools
🔧 Chemistry Utilities — 5 tools
Show all 5 tools
✍️ Writing & Publication — 10 tools
Format citations, build bibliographies, generate experimental section templates, check journal requirements, and prepare your SI — all from within Claude.
Show all 10 tools
📖 Examples
Literature workflow
Synthesis planning
Reaction development
Writing a paper
⚙️ Configuration
The easiest way to add API keys:
This walks you through each key and saves them to ~/.labmate-mcp.env. They're loaded automatically whenever you use labmate.
All keys are optional. 61 of 81 tools work without any configuration.
Available API keys
Aliases: S2_API_KEY, MP_API_KEY, RXN4CHEMISTRY_API_KEY also work.
Manual configuration
If you prefer to configure keys manually, add them to your Claude config:
Or create ~/.labmate-mcp.env directly:
🗄️ Built-in Databases
Everything below ships with labmate — no API calls, no internet required.
All 202 named reactions
Alder-Ene · Aldol · Appel · Arbuzov · Arndt-Eistert · Baeyer-Villiger · Balz-Schiemann · Bamford-Stevens · Barton Decarboxylation · Barton-McCombie · Baylis-Hillman · Beckmann · Biginelli · Birch · Bischler-Napieralski · Blanc Chloromethylation · Bouveault-Blanc · Brown Hydroboration · Buchner Ring Expansion · Buchwald-Hartwig (C–N) · Buchwald-Hartwig (C–O) · Burgess Dehydration · Cadiot-Chodkiewicz · Cannizzaro · Carroll · Catellani · CBS · Chan-Lam · Chichibabin · Claisen Condensation · Claisen Rearrangement · Clemmensen · Click (CuAAC) · Comins · Cope Elimination · Cope Rearrangement · Corey-Bakshi-Shibata · Corey-Chaykovsky · Corey-Fuchs · Corey-Kim · Corey-Nicolaou · Corey-Winter · Cross-Metathesis · Curtius · Dakin · Darzens · Dess-Martin · Dieckmann · Diels-Alder · Doering-LaFlamme · Enders SAMP/RAMP · Eschenmoser-Claisen · Eschenmoser-Tanabe Fragmentation · Eschweiler-Clarke · Evans Aldol · Favorskii · Ferrier · Finkelstein · Fischer Esterification · Fischer Indole · Fleming-Tamao · Friedel-Crafts Acylation · Friedel-Crafts Alkylation · Fries · Fukuyama · Gabriel · Gewald · Glaser · Grignard · Grubbs Metathesis · Hantzsch Pyridine · Heck · Henry · Hiyama · Hiyama-Denmark · Hofmann · Horner · Horner-Wadsworth-Emmons · IBX · Ireland-Claisen · Jacobsen Epoxidation · Jones · Julia-Lythgoe · Kharasch · Knoevenagel · Knorr Pyrrole · Koenigs-Knorr · Kolbe · Kulinkovich · Kumada · Lawesson · Lemieux-Johnson · Ley · Liebeskind-Srogl · Lossen · Luche · Malaprade · Mander Methylenation · Mannich · Matteson · Meerwein Arylation · Meerwein Reduction · Meerwein-Ponndorf-Verley · Meinwald · Michael · Midland · Minisci · Mitsunobu · Modified Julia · Mukaiyama Aldol · Myers · Negishi · Noyori · Nozaki-Hiyama-Kishi · Ohira-Bestmann · Olefin Metathesis · Oppenauer · Oppolzer Sultam · Overman · Oxy-Cope · Ozonolysis · Paal-Knorr · Parikh-Doering · Passerini · Paternò-Büchi · Pauson-Khand · Petasis · Peterson · Pfitzner-Moffatt · Piancatelli · Pictet-Spengler · Pinner · Pinnick · Polonovski · Prevost · Prins · Ramberg-Bäcklund · Reductive Amination · Reformatsky · Rieche · Riley · Ring-Closing Metathesis · Ritter · Robinson Annulation · Roskamp · Roush · Rubottom · Saegusa-Ito · Sakurai-Hosomi · Sandmeyer · Schmidt · Shapiro · Sharpless AD · Sharpless AE · Shi Epoxidation · Shiina · Simmons-Smith · Skraup · Sonogashira · Staudinger Ligation · Staudinger Reduction · Steglich · Stetter · Still-Gennari · Stille · Stork Enamine · Strecker · Suzuki · Suzuki-Miyaura · Swern · Takai · Tebbe · TEMPO · Tiffeneau-Demjanov · Transfer Hydrogenation · Trost AAA · Tsuji-Trost · Ugi · Ullmann · Upjohn · Van Leusen · Vilsmeier-Haack · Wacker · Weinreb Amide · Wharton · Williamson · Wittig · Wittig Rearrangement · Wohl-Ziegler · Wolff · Wolff-Kishner · Yamaguchi · Zincke Aldehyde
Reaction development checklist — 7 sections
Based on Kerr, Jenkinson, Sheridan & Sparr, "Reaction Development: A Student's Checklist", Chem. Soc. Rev. 2025, DOI: 10.1039/D4CS01046A. Each section contains guiding questions, specific checks to perform, and practical tips.
🏗️ Architecture
🤝 Contributing
Contributions are welcome! See CONTRIBUTING.md for details.
High-impact areas: more named reactions, more experimental templates, more journal guides, tests, and bug reports.
📄 License
MIT — use freely in academia and industry.
📚 Cite
If labmate-mcp is useful in your research, please cite the tools it builds on:
- Reaction development checklist — Kerr, M. A.; Jenkinson, M. A.; Sheridan, H.; Sparr, C. Chem. Soc. Rev. 2025. doi:10.1039/D4CS01046A
- p2smi — Feller, A. JOSS 2025, 10, 8319. doi:10.21105/joss.08319
- pichemist — Trastoy, B. et al. J. Chem. Inf. Model. 2023. AstraZeneca/peptide-tools
- OpenAlex — Priem, J.; Piwowar, H.; Orr, R. arXiv:2205.01833 (2022)
Made with 🧪 for chemists who'd rather be in the lab than Googling.
來源:README.md,提交 4530400
工具
0版本歷史
1- v7.3.1最新Sep 16, 2026
評分
已滿足適用檢查項的 50%
該評分衡量此收錄條目的完整程度,依據註冊中心條目、端點與公開來源計算得出。它不是對伺服器本身的評價,也不表示伺服器安全或目前可用:可連通性是帶日期的檢查結果,評分也不包含安裝量或使用者評價。
- 近 30 天內可連通25 分
請保持端點能夠回應 MCP 握手;SourceWeft 每 30 天探測一次。
- 已宣告認證方式10 分
請在註冊中心條目中宣告憑證請求標頭,或保持端點能夠回應探測,以便判定其認證方式。
- 已列出工具15 分
請讓伺服器在無憑證時回應 tools/list,或發布可在沙箱中無憑證啟動的軟體包。
- 描述必需15 分
- 圖示10 分
- 文件15 分
- 授權條款10 分