Oliver's mTOR Atlas

io.github.open-mtor-atlasv1.0.0Updated Oct 1, 2026

Evidence-labelled mTOR research: studies, entities, pathway claims, contradictions, open questions.

VerifiedSTDIODesktop onlyKnowledge & Memory

Installation

In SourceWeft

  1. Open Oliver's mTOR Atlas in the dashboard and add it to a workspace.
  2. Enable the server for the chats that should use its tools.

Desktop only via STDIO. STDIO servers start a local process, so they need the SourceWeft desktop host.

Other MCP clients

Follow the launch instructions in the repository.

README

mTOR Atlas MCP server

Read-only access to Oliver's mTOR Atlas for AI assistants that speak the Model Context Protocol: curated mTOR studies labelled by the kind of study behind them, entities (genes, complexes, drugs, diseases, processes), signed pathway relations with their supporting and conflicting evidence, and the Atlas's open questions.

The server reads the Atlas's public static API (https://mtor-atlas.org/api/v1/, documented at mtor-atlas.org/api). No key, no account. Data is CC BY 4.0.

Install

Claude Desktop, Claude Code, Cursor and other MCP clients:

json
{  "mcpServers": {    "mtor-atlas": { "command": "npx", "args": ["-y", "mtor-atlas-mcp"] }  }}

Claude Code: claude mcp add mtor-atlas -- npx -y mtor-atlas-mcp

Tools

ToolWhat it answers
atlas_aboutDataset version, corpus snapshot, counts, evidence codes, how to cite
search_studiesStudies by keywords, evidence code, linked entity, year
get_studyOne study with its entities, relations and open questions
search_entities / get_entityGenes, drugs, diseases… with their studies and relations
find_relations / get_relationPathway claims ("Rheb activates mTORC1") with mechanism, boundary conditions and confidence
evidence_between"What is the evidence that A acts on B?" with both supporting and conflicting studies
find_contradictionsContested claims, with both sides of the evidence
list_questions / get_questionOpen evidence gaps and testable hypotheses

Reading the evidence codes

S synthesis of human data · H human study · A animal model · M molecular / in vitro · R review · PP preprint · RT registered trial. The code describes the kind of study, not its quality. Every record the server returns repeats this, so a code never travels without its meaning.

"Not in the Atlas" means not in this curated corpus. It does not mean the relationship is unknown.

Cite

Barton O. Oliver's mTOR Atlas. doi:10.5281/zenodo.22059963. Give the dataset_version and corpus_snapshot returned by atlas_about.

Configuration

ATLAS_API_BASE (optional) points the server at another copy of the API, for example a local build: ATLAS_API_BASE=/path/to/dist/api/v1.

Code: MIT. Data: CC BY 4.0.

Source: mcp/README.md at commit e61f726

Tools

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Tool metadata has not been indexed yet.

Version history

1
  1. v1.0.0LatestOct 1, 2026