Tooluniverse Protein Structure Retrieval
mims-harvard/ToolUniverse/skills/tooluniverse-protein-structure-retrievalby mims-harvard1c075878cea014b0e08407eb16897252433c41faNo license1.7K starsListed Oct 9, 2026Updated Oct 9, 2026Repository updated today
Protein structure retrieval from RCSB PDB, PDBe, AlphaFold, SWISS-MODEL, 3D-Beacons (cross-provider structure aggregator), and PDB-REDO (re-refined X-ray structures), with disambiguation, quality assessment (resolution, R-factor, pLDDT, coverage), and metadata. Distinguishes high-quality experimental (X-ray under 2 Angstrom) vs predicted vs homology-model vs medium-quality structures. Use for fetching protein structures, structure-quality comparison, batch model-availability checks across a gene list, checking every structure provider at once, and selecting structures for drug design or modeling.
Add to a SourceWeft workspace
- Open the skill in your dashboard and add it to a workspace.
- Enable it for the chats that should use it.
This skill is instructions only: it ships no scripts to execute.
Add to SourceWeftYou will be asked to sign in first, then taken straight to this skill.
Ask your agent to install it
Paste this prompt into Claude Code, Codex, Cursor or another agent that can run commands — or into SourceWeft chat. The agent reads this skill's install guide, shows you its source, license and scripts, and installs it with the SourceWeft CLI once you agree.
Read https://sourceweft.com/skills/gh-mims-harvard-tooluniverse-tooluniverse-protein-structure-retrieval-skills-tooluniverse-protein-structure-retrieval-2554a9efa0300e78/install.md and install the skill it describes. Before installing, show me its source, license and whether it ships scripts, and wait for my OK. Ask me before changing anything else on my machine.Install it yourself from a terminal
For Claude Code, Codex, Cursor and other local agents. The SourceWeft CLI fetches the skill from its source repository at the commit scanned here, and verifies every file against the hashes recorded when the skill was scanned. If anything differs, nothing is written.
npx @sourceweft/cli skills install @mims-harvard/tooluniverse-protein-structure-retrieval-skillsAdd --agent claude-code, codex, cursor or universal to choose which agent gets it (Claude Code by default).
Upstream installer — not verified by SourceWeft
The open-source skills installer fetches the same pinned commit, but does not check the files against the hashes SourceWeft recorded.
npx skills add https://github.com/mims-harvard/ToolUniverse/tree/1c075878cea014b0e08407eb16897252433c41fa/skills/tooluniverse-protein-structure-retrievalSource and attribution
Source:mims-harvard/ToolUniverseinskills/tooluniverse-protein-structure-retrievalat commit1c07587
License: No license
Content belongs to its original authors. SourceWeft indexes it from a public repository.
More from mims-harvard/ToolUniverse
Tooluniverse Literature Deep Research
mims-harvard
Runs systematic literature reviews across PubMed, EuropePMC, preprints and citation networks, grading evidence and producing cited reports.
Tooluniverse Sequence Retrieval
mims-harvard
Retrieves DNA, RNA and protein sequences from NCBI and ENA with accession disambiguation and quality ranking.
Tooluniverse Disease Research
mims-harvard
Produces comprehensive, source-cited disease research reports covering genetics, pathways, drugs, trials, epidemiology and phenotypes.
Tooluniverse Drug Research
mims-harvard
Produces comprehensive drug investigation reports covering mechanism, targets, ADMET, trials, safety, pharmacogenomics and approval history.
Tooluniverse Clinical Guidelines
mims-harvard
Searches and retrieves clinical practice guidelines from NICE, WHO, NCCN, AHA, ADA and other authoritative sources.
Tooluniverse Literature Deep Research
mims-harvard
Runs systematic literature reviews across PubMed, EuropePMC, bioRxiv and citation networks, grading evidence T1-T4 and producing structured reports.
More in Research & Analysis
Sector Overview
anthropics
Produces industry and sector landscape reports covering market size, competitive positioning, valuation and investment implications.
Sector Overview
anthropics
Produces industry and sector landscape reports covering market size, competitive positioning, valuation and investment implications.
Idea Generation
anthropics
Systematic stock screening and investment idea sourcing using quantitative screens, thematic research and pattern recognition.
Competitive Analysis
anthropics
Builds competitive landscape decks: market positioning, competitor deep-dives, comparative tables and strategic synthesis.
Equity Research
anthropics
Builds structured equity research snapshots from consensus estimates, fundamentals, prices and macro data.
Sector Overview
anthropics
Produces industry and sector landscape reports covering market size, competitive positioning, valuation and investment implications.