Tooluniverse Protein Structure Retrieval
mims-harvard/tooluniverse/plugins/tooluniverse/skills/tooluniverse-protein-structure-retrievalby mims-harvard1c075878cea0No license1.7K starsListed Oct 9, 2026Updated Oct 9, 2026Repository updated today
Protein structure retrieval from RCSB PDB, PDBe, AlphaFold, SWISS-MODEL, 3D-Beacons (cross-provider structure aggregator), and PDB-REDO (re-refined X-ray structures), with disambiguation, quality assessment (resolution, R-factor, pLDDT, coverage), and metadata. Distinguishes high-quality experimental (X-ray under 2 Angstrom) vs predicted vs homology-model vs medium-quality structures. Use for fetching protein structures, structure-quality comparison, batch model-availability checks across a gene list, checking every structure provider at once, and selecting structures for drug design or modeling.
Only the file list is public. File contents are available once the skill is installed in a workspace.
| Path | Size | Type |
|---|---|---|
| CHECKLIST.md | 1.6 KB | text/markdown |
| examples.md | 7.4 KB | text/markdown |
| SKILL.md | 12.2 KB | text/markdown |
Source and attribution
Source:mims-harvard/tooluniverseinplugins/tooluniverse/skills/tooluniverse-protein-structure-retrievalat commit1c07587
License: No license
Content belongs to its original authors. SourceWeft indexes it from a public repository.
More from mims-harvard/tooluniverse
Tooluniverse Sequence Retrieval
mims-harvard
Retrieves DNA, RNA and protein sequences from NCBI and ENA with accession disambiguation and curation-level ranking.
Tooluniverse Literature Deep Research
mims-harvard
Runs systematic literature reviews across PubMed, EuropePMC, preprints and citation networks, grading evidence and producing structured reports.
Tooluniverse Drug Research
mims-harvard
Produces comprehensive drug investigation reports covering mechanism, targets, trials, safety, pharmacogenomics and approval history.
Tooluniverse Disease Research
mims-harvard
Generates comprehensive disease research reports with cited genetics, pathways, drugs, trials, epidemiology and phenotypes.
Tooluniverse Clinical Guidelines
mims-harvard
Searches and retrieves clinical practice guidelines from NICE, WHO, NCCN, AHA, ADA and other authoritative sources.
More in Research & Analysis
Equity Research
anthropics
Builds structured equity research snapshots from consensus estimates, fundamentals, prices and macro data.
Sector Overview
anthropics
Produces industry and sector landscape reports covering market size, competitive positioning, valuation and investment implications.
Idea Generation
anthropics
Systematic stock screening and investment idea sourcing using quantitative screens, thematic research and pattern recognition.
Competitive Analysis
anthropics
Builds competitive landscape decks: market positioning, competitor deep-dives, comparative tables and strategic synthesis.
Notion Research Documentation
openai
Researches Notion pages and synthesizes findings into cited briefs, comparisons, or reports published back to Notion.
Notion Meeting Intelligence
openai
Prepares meeting agendas and pre-reads using Notion context and research, tailored to attendees and meeting type.